PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G073400.1.p
Common NameSb08g006510, SORBIDRAFT_08g006510
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family DBB
Protein Properties Length: 246aa    MW: 24674.9 Da    PI: 4.8852
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G073400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-06545639
              zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                          C+ +e+ e+   C  ++  lC++C  + H+        H+v
  Sobic.008G073400.1.p  5 CDACERAEAAVLCCADEAALCRSCDAAVHSAnklaarhHRV 45
                          *****************************668888895655 PP
2zf-B_box254e-0878117437
              zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                           + C+ ++ek   +fC +++ llC+ C ++ H        H
  Sobic.008G073400.1.p  78 PACDICQEKTGYFFCLEDRALLCRPCDVAVHAAgvhvssH 117
                           67****************************9656744445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000218.36E-6547No hitNo description
SMARTSM003364.2E-7547IPR000315B-box-type zinc finger
SMARTSM003366.3E-1275122IPR000315B-box-type zinc finger
PROSITE profilePS501198.9375122IPR000315B-box-type zinc finger
CDDcd000211.42E-778122No hitNo description
PfamPF006433.5E-678116IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKIGCDACER AEAAVLCCAD EAALCRSCDA AVHSANKLAA RHHRVALLPS STAHPPSSTS  60
PIADDGSGSG GGGGDGHPAC DICQEKTGYF FCLEDRALLC RPCDVAVHAA GVHVSSHRRF  120
LITGVRVGDV ESLSHGVPGS DGGASPSTTS SGNGSSNAPG SSSGGGNPTT TTTTTTMPDQ  180
VRPSSSSSIR ATAATTAEGS PGQWQQWLWS DFLADDVGGG GGVDMEEECC HAELSEPGSS  240
GLTRS*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G073400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678206e-53AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence.
GenBankAL9548536e-53AL954853.5 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149686e-53AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126206e-53CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441993.11e-176B-box zinc finger protein 24
SwissprotQ9SYM25e-42BBX22_ARATH; B-box zinc finger protein 22
TrEMBLC5YTM31e-174C5YTM3_SORBI; Uncharacterized protein
STRINGSb08g006510.11e-175(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-32light-regulated zinc finger protein 1