PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G082000.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Nin-like

Protein Properties

Length: 440aa MW: 47448.7 Da PI: 5.9587

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G082000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	66.8	3.4e-21	355	404	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+d+++yF+lp+ +AAkeL +c+TvLK + R++ I+RWP+Rkiks+ Sobic.008G082000.1.p 355 SNLQLDDIARYFHLPMVEAAKELRICTTVLKGTSRKFHIRRWPYRKIKSI 404 799*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.698	344	424	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-20	356	404	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MADGAHNDGG ADDDGQGIYD PFLVPDDDFD DDVFNLLDMN GGMDAPPPPP PLQAAPGQSA 60 VAAGPSGDNN LLEWPPPTLD YINDSVVDNR DPMHNNATLL ADDPTTSSAR RRRRQDMGVA 120 GTSSAAAPRP PPPPPSSSAV HQNASLDCTG CQVLREIVHC NGLEATKLGV HGVAAGVFHH 180 ATLEVYRIDS NGLQAATMTT QLTHQSYVDF RGRDYVWVKH YLTNYARQRA GGGYVVLQDS 240 ISAFQDALCT SMVVSGGHAD DHREAVAQEI NGGHADDHRE AVAPEINGGH QRVVGSRPAD 300 DDGGAVQPAM VEQGSVPAET SAGPSSKPDA KEQGRRQEIP PAAKTALAIQ RERASNLQLD 360 DIARYFHLPM VEAAKELRIC TTVLKGTSRK FHIRRWPYRK IKSIDSQIAK LRRGNGDPAA 420 MRQIERLTDY RRRIYAGLE*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MADGAHNDGG ADDDGQGIYD PFLVPDDDFD DDVFNLLDMN GGMDAPPPPP PLQAAPGQSA  60
VAAGPSGDNN LLEWPPPTLD YINDSVVDNR DPMHNNATLL ADDPTTSSAR RRRRQDMGVA  120
GTSSAAAPRP PPPPPSSSAV HQNASLDCTG CQVLREIVHC NGLEATKLGV HGVAAGVFHH  180
ATLEVYRIDS NGLQAATMTT QLTHQSYVDF RGRDYVWVKH YLTNYARQRA GGGYVVLQDS  240
ISAFQDALCT SMVVSGGHAD DHREAVAQEI NGGHADDHRE AVAPEINGGH QRVVGSRPAD  300
DDGGAVQPAM VEQGSVPAET SAGPSSKPDA KEQGRRQEIP PAAKTALAIQ RERASNLQLD  360
DIARYFHLPM VEAAKELRIC TTVLKGTSRK FHIRRWPYRK IKSIDSQIAK LRRGNGDPAA  420
MRQIERLTDY RRRIYAGLE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G082000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321666.1	0.0	uncharacterized protein LOC8084238
TrEMBL	A0A1B6PCA4	0.0	A0A1B6PCA4_SORBI; Uncharacterized protein
STRING	Sb08g007760.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-12	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sobic.008G082000.1.p