PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G092300.3.p
Common NameSb08g012360, SORBIDRAFT_08g012360
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 538aa    MW: 58467.8 Da    PI: 7.1491
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G092300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-11105130126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ++++ C++++++GtC++G +CkF+H+
  Sobic.008G092300.3.p 105 PGEPDCSYYLKFGTCRFGIKCKFNHP 130
                           5789*********************8 PP
2zf-CCCH27.26.7e-09248270325
                           S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                           +e+C++++ +G Ck+G  Ck+ H
  Sobic.008G092300.3.p 248 QEECKYYSTSGGCKFGKACKYLH 270
                           589******************** PP
3zf-CCCH33.38.5e-11295319226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ++++C++++rtG Ck+  +CkF+H+
  Sobic.008G092300.3.p 295 GEKECPYYMRTGSCKFATNCKFHHP 319
                           7899********************9 PP
4zf-CCCH22.42.2e-07441467127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C++f ++G+Cky  +C+F+H++
  Sobic.008G092300.3.p 441 PGQPECQHFIKSGFCKYRMKCRFHHPR 467
                           5789*********************96 PP
5zf-CCCH24.73.9e-08487512227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++ C ++ r+G+CkyG+ C F+H++
  Sobic.008G092300.3.p 487 DQPVCTYYGRYGFCKYGPACMFNHPF 512
                           6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.2E-5104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774104132IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8106130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5109132IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-4245272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84245273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5249273IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6249270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5251272IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793293321IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7295319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5296320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4299318IPR000571Zinc finger, CCCH-type
SMARTSM003560.11440467IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807440468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5444468IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-4485512IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483485513IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5486513IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5487512IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MADADAKPPP PDAAASPVPS ISPSSVGAGN AVDADAIEKQ LAGLGIAVAG NGGGFPEPSG  60
WDDGPVPVRI PAAVLVGRDE GADEKPPAPA PTGAVDVKLR FPRRPGEPDC SYYLKFGTCR  120
FGIKCKFNHP ARKKKSSRVR GSGSNSSSNK ASSPDDDQAP REEYEGLVPD ISDSMGFDDK  180
GSLSSSEIYR KMSYEVIDME RGKLEPKEKI CEEPEKGIYF MKLDETNITT QKGAKDKRKE  240
TFAEGNAQEE CKYYSTSGGC KFGKACKYLH REGKEAKTEV EKAELNFLGL PLRPGEKECP  300
YYMRTGSCKF ATNCKFHHPD PTNASSKEPG LEHENADTPL QNVQGSCQPS LQIWPDHRTL  360
NEQHVPFLAP AQSYGGGMVP PQGMYPSPDW SGYHQVPLNP YYPPGVPFPH FPAAHMNHPM  420
YKAADVPGNQ PPPSDEYPER PGQPECQHFI KSGFCKYRMK CRFHHPRSGQ SAPLTGLSPI  480
GLPIKPDQPV CTYYGRYGFC KYGPACMFNH PFNFGPPVPA AGPPLPGQYP TPGNFTV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.97370.0leaf| panicle| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G092300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0392340.0BT039234.1 Zea mays full-length cDNA clone ZM_BFc0001O03 mRNA, complete cds.
GenBankJX4284720.0JX428472.1 Zea mays subsp. mays clone pUT3068 C3H54 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442111.10.0zinc finger CCCH domain-containing protein 65 isoform X1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A1Z5R5T80.0A0A1Z5R5T8_SORBI; Uncharacterized protein
STRINGSb08g012360.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Representative plantOGRP1476044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.19e-54C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]