PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G094700.1.p
Common NameSb08g014060, SORBIDRAFT_08g014060
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 268aa    MW: 28695.2 Da    PI: 10.0619
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G094700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.46.3e-45111461128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           lppGfrF+Ptdeel+v+yL++++ +++l+ +  i++v+i+ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk
  Sobic.008G094700.1.p  11 LPPGFRFRPTDEELIVHYLRRRALASPLPPAVDIPDVRILAHDPSDLlP--PGFSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGK 97 
                           79*************************988556**************53..3447899******************************* PP

                   NAM  89 dkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +k+v ++         +  lvg+k++Lvfy+g+ p+g+ktdWvmheyrl
  Sobic.008G094700.1.p  98 EKPVAVAvpatrggqgQAVLVGMKRSLVFYRGKPPTGSKTDWVMHEYRL 146
                           *****998998876544455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-498184IPR003441NAC domain
PROSITE profilePS5100548.36811184IPR003441NAC domain
PfamPF023652.8E-2612146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEVKDAAKPR LPPGFRFRPT DEELIVHYLR RRALASPLPP AVDIPDVRIL AHDPSDLLPP  60
GFSEQERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAVPATRG GQGQAVLVGM  120
KRSLVFYRGK PPTGSKTDWV MHEYRLAGAG LAPCRRATAQ QDGDGDAAVS RPAEGWVLCR  180
VFRKKKGSAA AARPGDRSDG DGDEGEEAGE SESAGAGGPG FIDFFARADA AGRRRRAASP  240
VVSSSCLTDA SPERQQGREQ ETTSRGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-37718611170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G094700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443168.10.0NAC domain-containing protein 83
TrEMBLC5YNL70.0C5YNL7_SORBI; Uncharacterized protein
STRINGSb08g014060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-55NAC domain containing protein 83