PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G096000.2.p
Common NameSb08g014320, SORBIDRAFT_08g014320
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 839aa    MW: 92325.9 Da    PI: 6.6472
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G096000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23144245199
                           EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F  
  Sobic.008G096000.2.p 144 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGIEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL- 231
                           99*****************************555555669************************************************. PP

                           -SSSEE..EEEEE-S CS
                    B3  85 dgrsefelvvkvfrk 99 
                            + +++el+v+v+r+
  Sobic.008G096000.2.p 232 -RGENGELRVGVRRA 245
                           .449999*****985 PP
2Auxin_resp111.21e-36270352183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a+ha++t+s+F+v+Y+Pr+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ ++dp+ W +SkWrsLk
  Sobic.008G096000.2.p 270 AWHAVNTGSMFTVYYKPRTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLK 352
                           89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-40139259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.45E-41139273IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-21142244No hitNo description
PROSITE profilePS5086311.646144246IPR003340B3 DNA binding domain
SMARTSM010191.4E-22144246IPR003340B3 DNA binding domain
PfamPF023621.6E-21144245IPR003340B3 DNA binding domain
PfamPF065077.3E-34270352IPR010525Auxin response factor
PROSITE profilePS5174524.101709793IPR000270PB1 domain
SuperFamilySSF542771.03E-10712785No hitNo description
PfamPF023091.8E-6756793IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAAAAPAAGG GGGAEAGCGG GGGKDPLFVE LWKACAGPLS SVPPLGEKVY YFPQGHIEQV  60
EASTNQIAEQ QGTPLYNLPW KIPCKLMNIE LKAEPDTDEV YAQLTLLPDK QDENTSTTVE  120
NEEAEEEVVP HAPPTNEGPR IHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSQHPP  180
NQELVAKDLH GIEWRFRHIF RGQPRRHLLQ SGWSVFVSAK RLVAGDAFIF LRGENGELRV  240
GVRRALRHQT TIPSSVISSH SMHLGVLATA WHAVNTGSMF TVYYKPRTSP AEFVVSRDRY  300
YESLKRNYSI GMRFKMRFEG EEAAEQRFTG TIVGIGASDP SGWADSKWRS LKVRWDEASS  360
VPRPERVSPW QIEPAISPSP VNPLPVRFKR SRSSVNASPS DVPTVSREVA SKVMAESQQS  420
NLPRALHNQG RTQLTGRYHD SSDVKTAQDL TMWSSGTEQQ RNNIAAQTKR SLEGWTQSRT  480
PEGYNQLFSA FQPLKDTHNP LCTFPSQISG TRSNTWDTAD ARYPAQQANH NMLHGTWPFM  540
PHSSGFRTNQ QNYLVMPEAA KFTGKSAFTS LQGHGTDQCS TGWFGHIESS SRTDHASSSS  600
IRPQPLVIGN DVQKTKGTSF KLFGIPLGSP EKSEPLVSPP SVAYDGKLQT SPSEKGNQLD  660
IVGVDNCSDP SKTVKPFDGP QSDSITENNQ PCPEATQNIQ NKVQSSSTRS CKKVHKQGSA  720
LGRSIDLTKF TCYDELIAEL DQMFDFDGEL KNPCKNWLVV YTDNEGDIML VGDDPWNEFC  780
DMVHKIFIYT REEVERMNPG ALNSRSEDSL SDSQGRGLAS KEPPRGGPST STPNSESC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-167163748354Auxin response factor 1
4ldw_A1e-167163748354Auxin response factor 1
4ldw_B1e-167163748354Auxin response factor 1
4ldx_A1e-167163748354Auxin response factor 1
4ldx_B1e-167163748354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.102630.0embryo| leaf| ovary| panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G096000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670080.0BT067008.1 Zea mays full-length cDNA clone ZM_BFb0145N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443175.10.0auxin response factor 24
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A1B6PD380.0A0A1B6PD38_SORBI; Auxin response factor
STRINGSb08g014320.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]