PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G103500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 24877.2 Da    PI: 9.1619
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G103500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.44.6e-241260250
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          ri+n+  rqvtfskRr g+ KKA EL vLCda+va++ifs +g+l+ ++
  Sobic.008G103500.1.p 12 RIDNSVSRQVTFSKRRRGLAKKARELAVLCDADVALLIFSDKGTLHHFA 60
                          8*********************************************997 PP
2K-box82.96.9e-28631481297
                 K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           a + +++ ++ k+++++e Lq++qR+l+Ge+LesL+++e qqLe+q++++l++iRs+K+++ll++ieelq+ke  l e+n  L+k+
  Sobic.008G103500.1.p  63 ARYGNMSYDHVKMRSKLEALQKSQRNLMGEQLESLTFREVQQLEHQIDSALRNIRSRKDHILLNSIEELQNKETFLMEQNSILEKE 148
                           5678999***************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-29362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.595363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-24465IPR002100Transcription factor, MADS-box
CDDcd002653.64E-32472No hitNo description
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-25525IPR002100Transcription factor, MADS-box
PfamPF003198.8E-231259IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-254061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.08465155IPR002487Transcription factor, K-box
PfamPF014864.8E-2467148IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRGRGKVEV RRIDNSVSRQ VTFSKRRRGL AKKARELAVL CDADVALLIF SDKGTLHHFA  60
AYARYGNMSY DHVKMRSKLE ALQKSQRNLM GEQLESLTFR EVQQLEHQID SALRNIRSRK  120
DHILLNSIEE LQNKETFLME QNSILEKEKA ALGASSLHTT NTADSSTAVA TAALPNLNIC  180
PGDDSDEPGR AAAPPPPGAA ISLPWWMLQP PPAVSQRQEQ EQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-13711452397Developmental protein SEPALLATA 3
4ox0_B2e-13711452397Developmental protein SEPALLATA 3
4ox0_C2e-13711452397Developmental protein SEPALLATA 3
4ox0_D2e-13711452397Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G103500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750671e-118EU975067.1 Zea mays clone 466497 MADS-box transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302331.11e-151MADS-box transcription factor 20
SwissprotQ2QQA32e-64MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A1B6PCQ51e-165A0A1B6PCQ5_SORBI; Uncharacterized protein
STRINGSb08g015555.11e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.17e-35AGAMOUS-like 8