PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G116800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 239aa    MW: 24840.3 Da    PI: 10.3966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G116800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.62.9e-05961361355
                           HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           R+ + s ++eL  +lP+ +   +++  sK ei+  A e +k+L+
  Sobic.008G116800.2.p  96 RRTVSSLYAELGAMLPNlP---TDRAASKEEIVDAAAERVKMLE 136
                           788999***********55...7777************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.00783135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-693148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MPAMSRPDPA RPDRVSSPSL PRRRDQTDAL PLVHNCSSKT PPAAHTRRSA MDGQGGGGWL  60
PLDLSLATAG DLSLATAGPS ASASAGERRP RPRPNRRTVS SLYAELGAML PNLPTDRAAS  120
KEEIVDAAAE RVKMLEDTVA VLETYRAVRS PAAAAAGRRQ PEVSVAVGAV CFCARLPARS  180
PGALARALEA FHRRGVEVLV ATVGRHGHGQ GAAVLTVTAA AAPPEVLEMI RADIAAIY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G116800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653791e-109EU965379.1 Zea mays clone 285663 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443294.21e-166uncharacterized protein LOC8065952
TrEMBLA0A1B6PE791e-165A0A1B6PE79_SORBI; Uncharacterized protein
STRINGSb08g017040.11e-127(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931
Representative plantOGRP1206823