PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G129300.1.p
Common NameSb08g018170, SORBIDRAFT_08g018170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 158aa    MW: 17277.3 Da    PI: 7.8551
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G129300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.13e-162988463
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                           +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++  +  ++a++++e+
  Sobic.008G129300.1.p 29 HRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARAADIASQYARVDQEN 88
                          58******************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-112282No hitNo description
SMARTSM003381.3E-172690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.1742891IPR004827Basic-leucine zipper domain
PfamPF001702.9E-122988IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.44E-103082No hitNo description
CDDcd147028.69E-173182No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSSSSLSPAG TGRTSGSSDG DSASAADTHR REKRRLSNRE SARRSRLRKQ QHLDELVQEV  60
ARLQAENARV AARAADIASQ YARVDQENTV LRARAAELGD RLRSVNDVLR VVEDFSGVAM  120
DIQDEMMPAD DPLLRPWQLP GYPAAAMPIG APHMLHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248RRSRLRK
24249RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.153280.0embryo| panicle| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves.
Functional Description ? help Back to Top
Source Description
UniProtMay contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G129300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342891e-165BT034289.1 Zea mays full-length cDNA clone ZM_BFc0009B07 mRNA, complete cds.
GenBankBT0884081e-165BT088408.1 Zea mays full-length cDNA clone ZM_BFc0179N23 mRNA, complete cds.
GenBankEU9647361e-165EU964736.1 Zea mays clone 281235 ocs element-binding factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442323.11e-109ocs element-binding factor 1
SwissprotP240688e-90OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLC5YPS71e-108C5YPS7_SORBI; Uncharacterized protein
STRINGSb08g018170.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.14e-26basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Singh K, et al.
    OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development.
    Plant Cell, 1990. 2(9): p. 891-903
    [PMID:2152133]