PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G133700.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 176aa    MW: 19708.1 Da    PI: 5.299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G133700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-16243548
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          ++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Sobic.008G133700.3.p  2 SPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                          899***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.02E-12143No hitNo description
SMARTSM007173.8E-11145IPR001005SANT/Myb domain
PROSITE profilePS5129423.752147IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-19244IPR009057Homeodomain-like
SuperFamilySSF466891.72E-12249IPR009057Homeodomain-like
PfamPF002493.9E-14242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSPHEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRNMSPSSSS  60
SSLTYQSGYP DTPSTIGVEG QELHGGSGCI TSILKGTPPD MDGYPMDQIW MEIEAPEVPS  120
EVGFVGGNEN VCSSLATPLP PPTVWEYYPE ACWKIDDEIK MAPQFSYSEG AGPCF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.91431e-168shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G133700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0391310.0BT039131.1 Zea mays full-length cDNA clone ZM_BFb0374B19 mRNA, complete cds.
GenBankBT0686400.0BT068640.1 Zea mays full-length cDNA clone ZM_BFb0353K20 mRNA, complete cds.
GenBankHQ8586750.0HQ858675.1 Zea mays clone UT1131 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321600.11e-129myb-related protein MYBAS2-like isoform X4
SwissprotQ4JL761e-78MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A1B6PDX21e-127A0A1B6PDX2_SORBI; Uncharacterized protein
TrEMBLA0A1Z5R7D01e-127A0A1Z5R7D0_SORBI; Uncharacterized protein
STRINGSb08g018580.11e-127(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.13e-35myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]