PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G133700.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 211aa    MW: 23556.6 Da    PI: 8.2064
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G133700.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-173378148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Sobic.008G133700.5.p 33 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 78
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-211384IPR009057Homeodomain-like
PROSITE profilePS500904.4261327IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-91340IPR009057Homeodomain-like
PROSITE profilePS5129425.5522882IPR017930Myb domain
SMARTSM007172.2E-163280IPR001005SANT/Myb domain
PfamPF002493.5E-153377IPR001005SANT/Myb domain
CDDcd001677.16E-133578No hitNo description
Gene3DG3DSA:1.10.10.607.8E-204179IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDRAGGPATA GLNRTGKSCR LRWVNYLHPG LKRGRMSPHE ERLILELHAR WGNRWSRIAR  60
RLPGRTDNEI KNYWRTHMRK KAQERKRNMS PSSSSSSLTY QSGYPDTPST IGVEGQELHG  120
GSGCITSILK GTPPDMDGYP MDQIWMEIEA PEVPSEVGFV GGNENVCSSL ATPLPPPTVW  180
EYYPEACWKI DDEIKMAPQF SYSEGAGPCF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-18148237105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-18148237105C-Myb DNA-Binding Domain
1msf_C3e-18148237105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.91430.0shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G133700.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686400.0BT068640.1 Zea mays full-length cDNA clone ZM_BFb0353K20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321598.11e-149myb-related protein MYBAS2-like isoform X2
SwissprotQ4JL767e-99MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A1Z5R7D01e-155A0A1Z5R7D0_SORBI; Uncharacterized protein
STRINGSb08g018580.11e-148(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-54myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]