PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G136100.1.p

Common Name

dof28, Dof28, Sb08g018760, SORBIDRAFT_08g018760

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 341aa MW: 34557.6 Da PI: 8.8762

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G136100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	4.8e-38	108	165	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Sobic.008G136100.1.p 108 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 165 679***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-32	90	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	109	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MVFSSLPIFL DPPSWGQMQM QQQPPLQCLL GGGGGGSDHH HLMPPPSGLA PLPGGPADTA 60 ASAPAGGGSS TSMQAAAGAG TAAAQPRPVV SMAERARLAR VPLPEPGTLR CPRCDSTNTK 120 FCYFNNYSLS QPRHFCKACR RYWTRGGALR NVPVGGGCRR NTKRSSKKSS RGGGGAGATA 180 ATSSSSTTST STTATTTTAT TTSAAMAAAE AIASMQAQLP HLGLPPAAAA AALEASLEGY 240 HHYLPLQMQP QFLQQAGLHG YHFADDGTGV LADGFPRGVV ASGLLAQLAA VKMEEHSSNG 300 GGAVAAHHEQ SYWPGSTGGG SGWPAEFLSG FSSSSSGNVL *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G136100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582419	0.0	KC582419.1 Sorghum bicolor dof28 protein (dof28) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002442354.2	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A1Z5R6M5	0.0	A0A1Z5R6M5_SORBI; Uncharacterized protein
STRING	Sb08g018760.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	9e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.008G136100.1.p
Entrez Gene	8068101

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]