PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G142100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 243aa    MW: 26816.1 Da    PI: 6.1712
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G142100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.53.8e-084716221127
                   NAM  21 kkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelv 100
                           + +++ + ++ e+  ++++ +++Pwd+p+        ++ +e yf +   +   +++ ++ atksgyWk       + s+       ++
  Sobic.008G142100.1.p  47 ELLKQYH-SIGEAGVNARLPSCDPWDIPAmpvdeGEGSKMREKYFVTDDCTL--KSSCTTPATKSGYWKPRDLGWGIPSSevigPALVT 132
                           4444444.3334556678999******9545543112233466666554443..45678889*******98876666664333355669 PP

                   NAM 101 glkktLvfykg...rapkgektdWvmheyr 127
                           glk+t  f+ g    ++ ++ t+W+m+ y 
  Sobic.008G142100.1.p 133 GLKTTYDFHIGetiYQEGSKGTSWIMDVYF 162
                           *********5522134444569****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.85328181IPR003441NAC domain
SuperFamilySSF1019411.96E-1345180IPR003441NAC domain
PfamPF023654.7E-552161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTAAACSSQS HPFAAPTFAV VVEDERYRVV DSPRNGGDAE ILRHLGELLK QYHSIGEAGV  60
NARLPSCDPW DIPAMPVDEG EGSKMREKYF VTDDCTLKSS CTTPATKSGY WKPRDLGWGI  120
PSSEVIGPAL VTGLKTTYDF HIGETIYQEG SKGTSWIMDV YFLIDNGQVE DDLLLCHVFK  180
GNSRDYVARP RCAAHHHESP KEKEIQGQSN NSLLERPGGL LATHISSNKH QNQRLFENKV  240
LL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G142100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301549.10.0uncharacterized protein LOC110429633
TrEMBLA0A1B6PDN60.0A0A1B6PDN6_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1859089
Representative plantOGRP1786422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.18e-08NAC domain containing protein 36