PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G147101.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 408aa    MW: 43095.5 Da    PI: 7.9252
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G147101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.1e-32246301156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k+r++W+peLH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Sobic.008G147101.1.p 246 KARRCWSPELHRRFVAALQRLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 301
                           68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.46E-17243304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-29243304IPR009057Homeodomain-like
PROSITE profilePS5129413.312243303IPR017930Myb domain
TIGRFAMsTIGR015572.6E-26246301IPR006447Myb domain, plants
PfamPF002496.0E-7248299IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MMARKEDHQQ QQQQLRALAA RAVTDSLRAA ASRCSAADRA ARFRDCVRSL EAEKAKMEVF  60
RRELPISVHL VADVIQWLKD ELAQAQHRRH PPPPPPSDLF APATTEAAAA PAPPPQTQAQ  120
AQDGAAVKAD DAEADANDKR SWMSSAQLWS CGSHDDSTAN TNGVAAAAHS KVSTAFMPTL  180
ASPPTLARSP VDAACKLAGA TPVPDLSLSP PPSSAAAAPS ATSSAVTDAD RAQRQHQQAQ  240
AQQQRKARRC WSPELHRRFV AALQRLGGAQ VATPKQIREL MKVDGLTNDE VKSHLQKYRL  300
HTRRASSDVG GGDHLAAAAV GGLWSSSGAA EQQYATSQHS TSQSQSGSPQ GPLQLTTVSS  360
RAMSATAGDS CDGDGDEAEG GGRSESYGWE MQQQQQQQHG TKASSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13246299154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13246299154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13246299154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13246299154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13246299255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.206600.0embryo| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G147101.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616580.0AY661658.1 Sorghum bicolor clone BAC 796all, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321610.10.0transcription factor HHO2
TrEMBLA0A1Z5R6Q60.0A0A1Z5R6Q6_SORBI; Uncharacterized protein
STRINGPavir.J13382.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-33G2-like family protein