PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G148600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 488aa    MW: 55292 Da    PI: 10.1379
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G148600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-16261171100
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffk++     +k+g +++pkkf++++ ++   s ++tl+ ++g+++++++  + ++++ vl++GW eF++a +L++ D +vFk +g  +
  Sobic.008G148600.2.p  26 FFKIM--IGDFKNG-VTIPKKFVANIREQ--MSEQVTLKVPDGKTYTIEV-AEEQQNELVLRSGWPEFASAYELEQFDLLVFKNSG--N 106
                           67777..7778887.********999766..5557***************.5777778*************************555..5 PP

                           E..EEEEE-SS CS
                    B3  90 felvvkvfrks 100
                            +l+v++f++s
  Sobic.008G148600.2.p 107 SHLKVRIFDRS 117
                           556****9985 PP
2B344.52.9e-14237322894
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                    B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                           + +l+sg+l ++kk+a++h  ++++  t++l +++g ++W+++l ++ ++ r+  ++GW +F + n+L+egD+++F+ +++ ++ +l +
  Sobic.008G148600.2.p 237 KKSLASGILPISKKYATKHLANENG--TIQLCQLDGsKVWTINLDITAND-RCAVSTGWMGFIRHNKLQEGDICIFQPSKNeKGLKLIF 322
                           56678899***********767545..8999999998*******665554.477888********************998856665554 PP
3B349.48.3e-16384482399
                           EE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   3 kvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                            v+++s+v+++ ++l ++  +a+e+   gg+++   t++++  ++  +We  +++r+++++++ ++GW++Fv +n+Lk   +++F l++
  Sobic.008G148600.2.p 384 AVMKNSNVNSRmCILGISSAYAREYlpgGGENQ--LTMRMRLrRKDHTWEPDFQVRNGRQQIY-GEGWRKFVTDNKLKPDHICLFNLKN 469
                           578899999888999***********9654433..46666664677*******9999999876.77*********************99 PP

                           SSEE..EEEEE-S CS
                    B3  87 rsefelvvkvfrk 99 
                           +++ ++ v+++rk
  Sobic.008G148600.2.p 470 TKTLTMDVHIIRK 482
                           9*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-2023119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.82923117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-1824119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-1924115No hitNo description
SMARTSM010193.2E-1126117IPR003340B3 DNA binding domain
PfamPF023621.2E-1426116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-16223316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-16224315IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.138230328IPR003340B3 DNA binding domain
SMARTSM010191.9E-6236326IPR003340B3 DNA binding domain
PfamPF023622.2E-11237323IPR003340B3 DNA binding domain
CDDcd100172.70E-11242323No hitNo description
Gene3DG3DSA:2.40.330.101.2E-15375482IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-15375482IPR015300DNA-binding pseudobarrel domain
CDDcd100179.19E-16380481No hitNo description
SMARTSM010196.0E-10382483IPR003340B3 DNA binding domain
PfamPF023626.1E-13383482IPR003340B3 DNA binding domain
PROSITE profilePS5086310.165383483IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MNKSGTVFKA CIAHHYWHYM DAPKRFFKIM IGDFKNGVTI PKKFVANIRE QMSEQVTLKV  60
PDGKTYTIEV AEEQQNELVL RSGWPEFASA YELEQFDLLV FKNSGNSHLK VRIFDRSGCE  120
KEISCVLLDS IPCMQERKGS HGKQMQSPTG KRLAVGSPSG SRKTPKMNPI DSPSQKKTEH  180
FPSSEGIHQE PINSGVSHKL IMSWTVCSMT SEQKAKVLAL EQKIQPKIPF YITAMYKKSL  240
ASGILPISKK YATKHLANEN GTIQLCQLDG SKVWTINLDI TANDRCAVST GWMGFIRHNK  300
LQEGDICIFQ PSKNEKGLKL IFHSLAQRRC LQPPGYVPSA KSLRHGAAKP PYILPRFTSL  360
TDEQKSKVEE KLRGIQSEIP AYVAVMKNSN VNSRMCILGI SSAYAREYLP GGGENQLTMR  420
MRLRRKDHTW EPDFQVRNGR QQIYGEGWRK FVTDNKLKPD HICLFNLKNT KTLTMDVHII  480
RKRSILC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G148600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616590.0AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442423.20.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT61e-149Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1Z5R6T00.0A0A1Z5R6T0_SORBI; Uncharacterized protein
STRINGSb08g019880.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-27B3 family protein