PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G149100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 379aa    MW: 44053.6 Da    PI: 8.6097
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G149100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-18641401698
                           EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            ++p kf+++++g+ +e+  + ++++sg++W v +   k++++ ++ +GW++Fvka++Lke+D ++F+  g+s+f   v +f+
  Sobic.008G149100.1.p  64 QSIPEKFVKKFNGQITEG--VDMKTPSGETWHVGV--AKNQDELFFVSGWEDFVKAHELKENDLLLFTCRGSSSF--QVVIFE 140
                           58*********8886665..9999***********..*******************************8887888..777765 PP
2B356.16.5e-182813691099
                           HHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                    B3  10 vlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                             +++ l++p++fa++h   +e+s++++l+ ++   +W v++ y+    r + +  W++Fv++n+L+egD++vF+l++  ++ ++ v+v
  Sobic.008G149100.1.p 281 RPRNNSLTIPRQFAADHL--EERSQEIILRRPNRkDKWYVRYYYTTA-IRSLKSYHWSKFVRENKLREGDICVFELMKGaKRVTMSVHV 366
                           446789***********6..347889*****65549******65444.44456668*******************99877999999999 PP

                           E-S CS
                    B3  97 frk 99 
                           ++k
  Sobic.008G149100.1.p 367 IKK 369
                           876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.25E-1627139No hitNo description
Gene3DG3DSA:2.40.330.103.4E-2048144IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3849142IPR003340B3 DNA binding domain
SMARTSM010193.7E-1058142IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-1962144IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1563140IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-23263368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-20264368IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-16269368No hitNo description
PROSITE profilePS5086313.719272370IPR003340B3 DNA binding domain
SMARTSM010191.4E-9275370IPR003340B3 DNA binding domain
PfamPF023623.0E-16277369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVEKGCERCK EWQEHYYWEH MDVSKIRFFK RMTGDFAHRT QISVSGRLLG YSVKEPQFTI  60
ITQQSIPEKF VKKFNGQITE GVDMKTPSGE TWHVGVAKNQ DELFFVSGWE DFVKAHELKE  120
NDLLLFTCRG SSSFQVVIFE GSGCEKVSSV FGNRFGPNMW RHFNDMEGKE AECYSQSDSE  180
DTATPPHQLV QSPHNASTSK KSICKRKQPE SPNSNSDYDV KQQGTREEDS DSDNEYTDFK  240
YYYSRTANRL SNDEKSKIIS LASIQPDNPA FITVLQMTNV RPRNNSLTIP RQFAADHLEE  300
RSQEIILRRP NRKDKWYVRY YYTTAIRSLK SYHWSKFVRE NKLREGDICV FELMKGAKRV  360
TMSVHVIKKV ENRFVLLG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G149100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616590.0AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302016.10.0B3 domain-containing protein Os12g0592300 isoform X3
SwissprotQ2QMT21e-131Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A1B6PDW90.0A0A1B6PDW9_SORBI; Uncharacterized protein
STRINGSb08g019900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-32B3 family protein