PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G149650.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 463aa    MW: 48983.4 Da    PI: 7.0291
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G149650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-31106159255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sobic.008G149650.1.p 106 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-15103159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28103159IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-23106159IPR006447Myb domain, plants
PfamPF002494.1E-7107158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSTTGSAGVP TTTTPPDLSL HISPPSPPAG GVKMPPEPRL MLGLELDDDD TMAAASKKVD  60
DAAAVNEHNL QVQRLRLHHQ PSQTAHGFKK NSPGGGGGAR RSSRAPRMRW TTALHAHFVH  120
AVELLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KGTDRSCVAG PGHHQARDMV  180
LLRTGVGEGD GFDVFNSNNS VNTIPTFNNN TDRRSRSPGE QQQQAVDRHQ DATAAASACA  240
WIHQVQQQQQ QLPAQQQSCC SNEVIMLQAS PCRRRLPAPY SNGLIVVPAD EPASTDGNGL  300
LMTTTTEQRQ QQGLKKVGDE HVDRHHGEDD AAVAVHHLVD EADHDHAGSG GGGGVQRRRR  360
PSSSSPNNTS GSSGDTASTS EWLHQQYCSD GGGGAGMSVR VLALGLGVGP PATATATATP  420
PSLEMSLGRQ GWQTMVEQCG VGGEFESSPS AAAKELTLLR CL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16107161357Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G149650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616590.0AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301545.10.0uncharacterized protein LOC8069722 isoform X2
TrEMBLA0A1Z5R6T90.0A0A1Z5R6T9_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.29e-31G2-like family protein