PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G149650.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 324aa    MW: 34274.7 Da    PI: 6.5018
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G149650.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.21e-091203655
               G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                          m+vk+Ltl+hvkSHLQ+YR+
  Sobic.008G149650.2.p  1 MNVKDLTLAHVKSHLQMYRT 20
                          9******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-8120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNVKDLTLAH VKSHLQMYRT VKGTDRSCVA GPGHHQARDM VLLRTGVGEG DGFDVFNSNN  60
SVNTIPTFNN NTDRRSRSPG EQQQQAVDRH QDATAAASAC AWIHQVQQQQ QQLPAQQQSC  120
CSNEVIMLQA SPCRRRLPAP YSNGLIVVPA DEPASTDGNG LLMTTTTEQR QQQGLKKVGD  180
EHVDRHHGED DAAVAVHHLV DEADHDHAGS GGGGGVQRRR RPSSSSPNNT SGSSGDTAST  240
SEWLHQQYCS DGGGGAGMSV RVLALGLGVG PPATATATAT PPSLEMSLGR QGWQTMVEQC  300
GVGGEFESSP SAAAKELTLL RCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G149650.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616590.0AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301545.10.0uncharacterized protein LOC8069722 isoform X2
TrEMBLA0A1Z5R6T90.0A0A1Z5R6T9_SORBI; Uncharacterized protein
TrEMBLA0A1Z5R7C60.0A0A1Z5R7C6_SORBI; Uncharacterized protein
STRINGGRMZM2G370425_P012e-56(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-09G2-like family protein