PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G153700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 167aa    MW: 18043 Da    PI: 10.5254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G153700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.2e-163785355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          ++hn  E+rRR++i +++ +Lr+l+P +    + K + a+iL +++++IksLq
  Sobic.008G153700.1.p 37 ETHNLTEKRRRRKIDDKLKTLRQLVPGC----DDKSNQASILDQTIQHIKSLQ 85
                          58*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-183392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-193391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1453484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-153789No hitNo description
PfamPF000102.3E-143785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-134090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDCGMAQVVG MATTDHEYAG ISRKKATGGA RRSHPAETHN LTEKRRRRKI DDKLKTLRQL  60
VPGCDDKSNQ ASILDQTIQH IKSLQQQIQV QPKAISLGCD AIKPPAVYPV VLPQGTAVAA  120
AGELLPPAAA LPPAVLAMAA RGHVRPGLAP LHHLRRWCLS VPFFQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14348KRRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G153700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442458.16e-27transcription factor APG
TrEMBLA0A1B6PDZ41e-118A0A1B6PDZ4_SORBI; Uncharacterized protein
STRINGSb08g020275.12e-91(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.42e-12phytochrome interacting factor 3-like 6