PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G153801.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 187aa    MW: 20224.1 Da    PI: 9.6909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G153801.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-1373121355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +ah+  E+rRR +i++++ +L++l+P +   p    + a++L ++++YIksLq
  Sobic.008G153801.1.p  73 EAHSLTEKRRRLKIKEKLKTLQQLVPGC---P-NNSNQASTLDQTIRYIKSLQ 121
                           68*************************8...4.34799**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1568126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.20570120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1673124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-1173121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-1373122No hitNo description
SMARTSM003534.3E-1076126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MASWLFPIVC GAGEEVAGGG DAVVVAGRRA WVVDDDQMVP SGKGLESSSD HKLQEKRKTS  60
STGRGKRSHH HAEAHSLTEK RRRLKIKEKL KTLQQLVPGC PNNSNQASTL DQTIRYIKSL  120
QQHILQAMSG MKPTSVAVCP VVQQAPCLPC WQGGTSVQRD GSWALPSYSS VLPPCFHGFT  180
FTAMQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G153801.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806978.18e-30putative transcription factor bHLH056
TrEMBLA0A1Z5R7131e-136A0A1Z5R713_SORBI; Uncharacterized protein
STRINGSb08g020280.13e-86(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.14e-07bHLH family protein