PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G153801.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 164aa MW: 17556.1 Da PI: 9.4755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G153801.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.6e-08	73	101	3	34
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskap 34 +ah+ E+rRR +i++++ +L++l+P + p Sobic.008G153801.2.p 73 EAHSLTEKRRRLKIKEKLKTLQQLVPGC---P 101 68************************97...3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.67E-8	62	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.35	70	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-9	73	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.46E-6	73	103	No hit	No description
Pfam	PF00010	6.1E-6	73	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MASWLFPIVC GAGEEVAGGG DAVVVAGRRA WVVDDDQMVP SGKGLESSSD HKLQEKRKTS 60 STGRGKRSHH HAEAHSLTEK RRRLKIKEKL KTLQQLVPGC PNNAMSGMKP TSVAVCPVVQ 120 QAPCLPCWQG GTSVQRDGSW ALPSYSSVLP PCFHGFTFTA MQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	83	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G153801.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806978.1	1e-14	putative transcription factor bHLH056
TrEMBL	A0A1Z5R807	1e-117	A0A1Z5R807_SORBI; Uncharacterized protein
STRING	Sb08g020280.1	2e-68	(Sorghum bicolor)

Link Out ? help Back to Top
Phytozome	Sobic.008G153801.2.p