PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G160500.1.p
Common NameSb08g020790, SORBIDRAFT_08g020790
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CPP
Protein Properties Length: 410aa    MW: 44239.5 Da    PI: 7.046
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G160500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.56.1e-14101138340
                   TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           +k+C+Ckks+C+k+YC Cfa+g+ C+e+C Ce C+Nk+
  Sobic.008G160500.1.p 101 CKTCSCKKSRCMKLYCVCFASGSRCTESCGCEPCENKQ 138
                           79**********************************96 PP
2TCR47.24.3e-15178213439
                   TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                           ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dC+N 
  Sobic.008G160500.1.p 178 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCRNP 213
                           79********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-799140IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163426.509100215IPR005172CRC domain
PfamPF036381.6E-9102137IPR005172CRC domain
SMARTSM011148.3E-15175216IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.5E-11178212IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDAEVGAPNL PLPEEPAGSE PDDARLSPPR PAPAPPPPPP PPAPAPAPAP VQALTPAAEA  60
AAPTASAAVS PPAPAPAPAP AEANGTSDRK RRRKAEDGDG CKTCSCKKSR CMKLYCVCFA  120
SGSRCTESCG CEPCENKQPL QVAPRTALIL PLKPVQTSEA GQDIVEQVIR SPMDLIRRKC  180
TCKKSGCLKK YCDCYQGGAG CSINCKCDDC RNPFGRKVGV ILDGKSSVAA PILQERNGTE  240
VDSSDDEDDF YMNRQLSPIP PSPVSRESSF QQETLVGVEV QTMNGHLYPK PLAQVRPEPP  300
SWQLSRRPVE EPRGEIWRFS RRPSEDGTSD AMEAHAIAPR ESKKPEIHGD NRFSIPRCIE  360
VMSAMAELSP VEKSLAPDVF LDASNREIFL SLSVDIRPMW LRRKMKSLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.100680.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G160500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0540460.0BT054046.1 Zea mays full-length cDNA clone ZM_BFc0149M24 mRNA, complete cds.
GenBankEU9676700.0EU967670.1 Zea mays clone 305228 tesmin/TSO1-like CXC domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443514.10.0uncharacterized protein LOC8076665
TrEMBLC5YRG90.0C5YRG9_SORBI; Uncharacterized protein
STRINGSb08g020790.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Representative plantOGRP1307345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-36TESMIN/TSO1-like CXC 2