PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G164800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 335aa    MW: 35971.9 Da    PI: 9.0206
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G164800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-51131411128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGfrFhP+d+el+++yL++k+ gk  ++  +  + +vd++kvePwdLp +++ + +ewyfFs +d+kyatg+r+nrat sgyWkatg
  Sobic.008G164800.2.p  13 LPPGFRFHPRDDELICDYLAPKLGGKVgFSGRRPpMVDVDLNKVEPWDLPVAASVGPREWYFFSLKDRKYATGQRTNRATVSGYWKATG 101
                           79***********************9986665656***************88888999******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd+ v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+
  Sobic.008G164800.2.p 102 KDRVVAR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRM 141
                           ***9999.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-562170IPR003441NAC domain
PROSITE profilePS5100554.48913170IPR003441NAC domain
PfamPF023651.1E-2614141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSMSFLSMVE AELPPGFRFH PRDDELICDY LAPKLGGKVG FSGRRPPMVD VDLNKVEPWD  60
LPVAASVGPR EWYFFSLKDR KYATGQRTNR ATVSGYWKAT GKDRVVARRG ALVGMRKTLV  120
FYQGRAPKGR KTEWVMHEYR MEPALDPSSS SNFSSNSKDE DWVLCRVICK KKLAGGGGSS  180
KASRSLVCNG SREAAPTTSP PLPALMDTTL AQLQAAMNTT TTTGAGALEQ VPCFSSFNNN  240
IASNSNGNGN SAAATAAAVA QPCYLPMATG GSHGMMSYLD HGLLPELGSC FDPLNSDKKL  300
LKAVLSQFGG DVVPSLQHEM AAAATATSTW MNHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4911711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.212150.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G164800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653740.0EU965374.1 Zea mays clone 285645 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302064.10.0NAC domain-containing protein 21/22-like
TrEMBLA0A1Z5R7M10.0A0A1Z5R7M1_SORBI; Uncharacterized protein
STRINGSb08g021080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Representative plantOGRP1464544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-70NAC domain containing protein 1