PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G169400.1.p
Common NameSb08g021460, SORBIDRAFT_08g021460
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 896aa    MW: 98609.5 Da    PI: 5.9228
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G169400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23129230199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F
  Sobic.008G169400.1.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELVARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIF 215
                           99*****************************85545444..8*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++ +l+++++r+
  Sobic.008G169400.1.p 216 I--WNDNNQLLLGIRRA 230
                           *..7777778***9997 PP
2Auxin_resp1187.9e-39255338183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+ rWpnS+Wrs+k
  Sobic.008G169400.1.p 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSERWPNSHWRSVK 338
                           79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.19E-47117258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-42121244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-21128229No hitNo description
PROSITE profilePS5086312.548129231IPR003340B3 DNA binding domain
PfamPF023621.3E-21129230IPR003340B3 DNA binding domain
SMARTSM010196.6E-25129231IPR003340B3 DNA binding domain
PfamPF065073.1E-34255338IPR010525Auxin response factor
PfamPF023091.3E-7759847IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-7761837No hitNo description
PROSITE profilePS5174523.182762846IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MNLSPPKMSE PSPESDGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN  60
KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETEEVYAQMT LQPLSPEEQK EPFLPIELGA  120
GSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELV ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP  360
LTTFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGNRGA QSLNFQGLGA  420
SPWLQPRIDY PLMGLKPDTY QQMAAAALEE IRAGDHLKQT SSLLPVQQTQ NLNGGLDPLY  480
GNPVLQQMQF QSQQSPLQAV QQGYGQNASE SGFLQNQLQQ LQLQKQQEPP QQQQQQTQVL  540
QQQSHQEMQQ HLSASCHDIA NVASGVSESG SACQSQSSLL SGSSFYQQNL FDGNNGPDLH  600
LHNSFHNFSS QESSNLLNLP RSGQLMASEG WPSKRLAVES LAGHELQPVQ LKLEKVNHQS  660
NVSHVSGTLP PLSARDGSSA QACGTNVQSN LLSSSFAIHD GLSTVRSGGV GSGTDAITIA  720
SLRYGDMNLL PENSIATSSC LGESGTFNSL DDVCGVNPSQ GGTFVKVYKS GSLGRSLDIT  780
RFSSYYELRS ELERLFGLEG QLEDPVRSGW QLVFVDREND ILLVGDDPWQ EFVNSVWCIK  840
ILSPQDVQQM VRGGGDLLSA PGARMLQSSV CDDYSAGHDM QNLTGIIAPV VPLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641435943388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.149470.0ovary| panicle| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G169400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279630.0KJ727963.1 Zea mays clone pUT6075 ARF transcription factor (ARF34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443554.10.0auxin response factor 25
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLC5YRZ90.0C5YRZ9_SORBI; Auxin response factor
STRINGSb08g021460.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]