PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G172200.1.p
Common NameSb08g021690, SORBIDRAFT_08g021690
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 303aa    MW: 31236.9 Da    PI: 7.0992
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G172200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.42.1e-33431561101
                   TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssas 71 
                           aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a +ai+ l+++                        
  Sobic.008G172200.1.p  43 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAAAAIDGLPSLdcsfalptaagaasppgaA----- 126
                           6899*************************************************************9999888766543333320..... PP

                   TCP  72 eceaesssssasnsssg.....kaaksaakskksq 101
                              +++++s++++s+s+     +a+++  +   +q
  Sobic.008G172200.1.p 127 ---DDAEVSTSDTSKSSvlslaNASAD--NAAAQQ 156
                           ...222222222222223332211111..111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3245150IPR005333Transcription factor, TCP
PROSITE profilePS5136931.51546104IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEEVAVAAGM ERAAGCKRPR GALDGGGSAS AAAWRTCRVA RAAAGGKDRH SKVVTARGLR  60
DRRVRLSVPT AIQFYDIQDR LGVDQPSKAI EWLIRAAAAA IDGLPSLDCS FALPTAAGAA  120
SPPGAADDAE VSTSDTSKSS VLSLANASAD NAAAQQASHA YNGNAAGGGG AFAELILHCS  180
PNDSKPVQQQ PTLAYYAAQP PSAHAASALS SFETMPHFSF LQEQPHPAVA FDRGTLQSNA  240
AVAAPLWPTS QQACLLQRFA ASPADATGLP FFLGGSAAAS PMVPDNSEPR LQLWDFKQER  300
KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2351105155Putative transcription factor PCF6
5zkt_B9e-2351105155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G172200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268040.0KJ726804.1 Zea mays clone pUT3063 TCP transcription factor (TCP38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442549.10.0transcription factor PCF8
RefseqXP_021301595.10.0transcription factor PCF8
RefseqXP_021301596.10.0transcription factor PCF8
SwissprotA2ZMR92e-93PCF8_ORYSI; Transcription factor PCF8
TrEMBLC5YS270.0C5YS27_SORBI; Uncharacterized protein
STRINGSb08g021690.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-29TCP family protein