PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G173200.1.p
Common NameSb08g021790, SORBIDRAFT_08g021790
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 214aa    MW: 22697.2 Da    PI: 7.4584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G173200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-057294123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C  C+k F ++  L+ H++ H
  Sobic.008G173200.1.p 72 FPCLFCSKKFVTSQALRGHQNAH 94
                          89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-66899No hitNo description
Gene3DG3DSA:3.30.160.603.3E-56898IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3447299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEKPPPPPCR PHPPATATNV DDDDDDYVVH LSLKLGPSSP PRRSSPRPAV VVSDGAAAGN  60
AGSGSGAGAR LFPCLFCSKK FVTSQALRGH QNAHRKERRS VGRNDGGAQR RHHLYYDDIQ  120
EATPATTSIT TGMLRLPPPA AWVATPVSHS CTPPPHGGHP RRGHHMDGDG DDLAVVAFGA  180
APHHRCTAVD DDHKDSHGDE KQIAQVVDLD LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G173200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443572.11e-154zinc finger protein GIS3
TrEMBLC5YSC81e-152C5YSC8_SORBI; Uncharacterized protein
STRINGSb08g021790.11e-153(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP384714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.19e-12C2H2 family protein