PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G176300.1.p
Common NameSb08g022030, SORBIDRAFT_08g022030
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family YABBY
Protein Properties Length: 200aa    MW: 22135.2 Da    PI: 8.8235
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G176300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY239.76.4e-7471715170
                 YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.lleelkveeenlksnvekeesa 92 
                             +++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++ l+ +++l+e++k + +  +l+++  +l+     ++s+
  Sobic.008G176300.1.p   7 APADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVNLRALMHSLPEQDQLQENIKVHgVNGTLHDQCGHLE---LGSSSS 92 
                           5689********************************************************99998833334443333333...333222 PP

                 YABBY  93 stsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            ++ +  ++  ++ne+    ++ +  rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Sobic.008G176300.1.p  93 -SKFRLPMMysPQNEHLLQEQTLNNARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 171
                           .2333333411333333344455678****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.4E-738171IPR006780YABBY protein
SuperFamilySSF470954.58E-8118165IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-5118165IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSSAQIAPAD HVCYVHCNFC NTVLAVSVPG NSMLNIVTVR CGHCTNLLSV NLRALMHSLP  60
EQDQLQENIK VHGVNGTLHD QCGHLELGSS SSSKFRLPMM YSPQNEHLLQ EQTLNNARPP  120
EKRQRVPSAY NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHYPNIHFG LNSGREGGKK  180
LVDEAVAAAP APKKIQGFY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.72550.0ovary
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G176300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9608520.0EU960852.1 Zea mays clone 229062 axial regulator YABBY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442565.11e-149protein YABBY 6
SwissprotQ2QM178e-97YAB6_ORYSJ; Protein YABBY 6
TrEMBLC5YSF31e-148C5YSF3_SORBI; Uncharacterized protein
STRINGSb08g022030.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.27e-60YABBY family protein