PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G187001.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 244aa    MW: 26392.9 Da    PI: 8.2603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G187001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476e-151463148
                          TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W+ eEd +l ++++++Gg    W + +r+ g++R++k+c++rw++yl
  Sobic.008G187001.1.p 14 RGPWSSEEDAQLRCYIERHGGAagGWMALPRKAGLRRCGKSCRLRWLNYL 63
                          89******************9899************************97 PP
2Myb_DNA-binding32.81.6e-1070112246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g ++++Ed  +  + +  G++ W++Ia+++  gRt++ +k++w++
  Sobic.008G187001.1.p  70 GGFSPDEDRVICALYAAVGSR-WSLIAAHLH-GRTDNGVKNYWNT 112
                           569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.771967IPR017930Myb domain
SuperFamilySSF466893.71E-2412110IPR009057Homeodomain-like
SMARTSM007176.4E-91365IPR001005SANT/Myb domain
PfamPF002497.6E-131463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-191570IPR009057Homeodomain-like
CDDcd001674.15E-71663No hitNo description
PROSITE profilePS5129413.61768118IPR017930Myb domain
SMARTSM007172.4E-868116IPR001005SANT/Myb domain
PfamPF002495.3E-970112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2171117IPR009057Homeodomain-like
CDDcd001672.12E-672114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRSPCCDKA TVKRGPWSSE EDAQLRCYIE RHGGAAGGWM ALPRKAGLRR CGKSCRLRWL  60
NYLRPGVRHG GFSPDEDRVI CALYAAVGSR WSLIAAHLHG RTDNGVKNYW NTRLKKRFQL  120
LFAGMPPPPA VPVPLPWTTG LLPCGTGGGV DDTRIIGAGG GGNGTDDDMV TGRTNDVVVV  180
SQRPAETSSS SCGPAATTEL DEMFRSMGTT GGDHSDMCQS STEIETASWY HCQYLGSMPY  240
MYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21141187108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G187001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964229.21e-110transcription factor RAX1
SwissprotQ9SJL73e-63RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A1Z5R8F41e-179A0A1Z5R8F4_SORBI; Uncharacterized protein
STRINGOPUNC12G18070.13e-66(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.15e-63MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]