PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G028300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 427aa    MW: 46398.2 Da    PI: 6.7313
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G028300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.23.3e-2165133169
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                           +W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + 
  Sobic.009G028300.2.p  65 QWSHAETAAFLAVRADLDHSFLTTKRNKALWEAVSARLHAQGFARTPDQCKSKWKNLVTRFKGTEAAAA 133
                           7*************************************************************9988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.91E-2264129No hitNo description
PfamPF138377.5E-1665130No hitNo description
PROSITE profilePS500907.49166122IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDPFHHLNTS FSNPYHPLLS PSPPHHPHFP PLPPLPDPPH HQLPSASAAS SAAAATSLER  60
DRLPQWSHAE TAAFLAVRAD LDHSFLTTKR NKALWEAVSA RLHAQGFART PDQCKSKWKN  120
LVTRFKGTEA AAAAAAAAAA AAVVDPASAS AAQSRPQFPF HDEVRRIFDA RAERAQALER  180
KRAKGKGVRD RDDEGAGEGE DVDEEDEDDE IEADAAEAAV GGDEELPVDA SRSGGGGGGG  240
TKKRRRKQQQ QAARAARVAA DQGEVEAMLR EFMRRQAEME ERWVEAAEAR EAERRAREEE  300
WRAAMVALGE ERLALVRRWR EREDAWRARA EEREERRHQL VAALLAKLGG GGGGGGDSRA  360
SVAMHASIDP SAVARDATSS VQNPPAHRYG PNPSTPYSLI LIVMSSSSSE QRCFTAKSAH  420
RPDSYS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G028300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9463421e-113EU946342.1 Zea mays clone 305005 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439215.10.0trihelix transcription factor GT-3b
RefseqXP_021302586.10.0trihelix transcription factor GT-3b
RefseqXP_021302587.10.0trihelix transcription factor GT-3b
TrEMBLA0A1Z5R0L50.0A0A1Z5R0L5_SORBI; Uncharacterized protein
STRINGSb09g002370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Representative plantOGRP1431444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.15e-28Trihelix family protein