PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G030100.1.p

Common Name

Sb09g002510, SORBIDRAFT_09g002510

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 148aa MW: 16039 Da PI: 10.1688

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G030100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46	1.1e-14	30	89	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR++K++++eeL +v+ L+aeN a ++++ + e ak++ ++ Sobic.009G030100.1.p 30 ERKRKRMLSNRESARRSRAKKQQRLEELVAEVARLQAENAAAQSRIAAFEREFAKVDGDN 89 46789999*****************************************99999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-18	27	91	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.496	29	92	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-12	29	85	No hit	No description
Pfam	PF00170	4.1E-10	31	83	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.2E-10	31	84	No hit	No description
CDD	cd14702	1.16E-16	32	83	No hit	No description
PROSITE pattern	PS00036	0	34	49	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSSSRRSSSP DSNNNTDVSG GGGGGFAADE RKRKRMLSNR ESARRSRAKK QQRLEELVAE 60 VARLQAENAA AQSRIAAFER EFAKVDGDNA VLRARHGELS SRLESLGGVL EVLQMAGAAV 120 DIPEMVTEDP MLRPWQPSFP PMQPIGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.14633	0.0	callus\| embryo\| leaf\| panicle\| root\| shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G030100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009178	1e-130	BT009178.1 Triticum aestivum clone wl1n.pk0114.f9:fis, full insert mRNA sequence.
GenBank	BT068578	1e-130	BT068578.2 Zea mays full-length cDNA clone ZM_BFb0345C11 mRNA, complete cds.
GenBank	EU977026	1e-130	EU977026.1 Zea mays clone 996656 ocs element-binding factor 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002439223.1	1e-102	ocs element-binding factor 1
Swissprot	P24068	7e-32	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	C5YZG1	1e-100	C5YZG1_SORBI; Uncharacterized protein
STRING	Sb09g002510.1	1e-101	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100
Representative plant	OGRP551	16	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	9e-30	basic region/leucine zipper motif 53

Link Out ? help Back to Top
Phytozome	Sobic.009G030100.1.p
Entrez Gene	8071272

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]