PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G034800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 565aa    MW: 58154.7 Da    PI: 6.1235
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G034800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30284342259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+
  Sobic.009G034800.2.p 284 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKAVLITTYEGTHNHQ 342
                           7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-33268344IPR003657WRKY domain
SuperFamilySSF1182901.15E-27276344IPR003657WRKY domain
PROSITE profilePS5081129.321278344IPR003657WRKY domain
SMARTSM007741.7E-36283343IPR003657WRKY domain
PfamPF031061.6E-26285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MDLVPKQQQQ QRSKEKQEEE EEMMMALAEH GDRPQAAAFG HGGGGGGGRR SEIKEVDFFS  60
TAGGAARRRT DDDDDGDREE AAAGALARGC HNTTVNTALD LLTTRAAAAA ATPAAVDGGE  120
GTASGRDTEV DVAATAAVEG ELRQASEENR RLRRMLEELT RSYGALYHQL IQAQAQQQQQ  180
QACSGGAANP MLPAATTTGV QFMDHAGRVA PAIAGEAAPP AFSGDRGDSD DGSGGNGGEA  240
DQNDGMKTPE RGENVDRSPA AAAEAPLRRA RVSVRARSEA PMISDGCQWR KYGQKMAKGN  300
PCPRAYYRCT MATGCPVRKQ VQRCAEDKAV LITTYEGTHN HQLPPAAAAM AKTTSAAAAM  360
LLSGPAVSRD VGALFAGHHV AAPAPLFQYH HPYASAMAGA TLSASAPFPT ITLDLTHAPS  420
PGAAAAAAAA AGLLQQRQLM PPPVPTMTPF PMYGFTAAAG HRPVPPPQPP AATTLFGLDG  480
SNRSALETMT AAITNDPNFT TVVAAALSTI MAGGAEPPVP RSGAADAGDG SNGSVGIEPA  540
TAAAAGAREN ALHALLQRLH DSRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-23270346176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G034800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304147.10.0probable WRKY transcription factor 31 isoform X2
TrEMBLA0A1B6P6D20.0A0A1B6P6D2_SORBI; Uncharacterized protein
STRINGPavir.J02788.1.p1e-175(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-49WRKY family protein