PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G039900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 174aa    MW: 20085.5 Da    PI: 7.694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G039900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.6e-1199142447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WTt E+  ++++ + +G+g W++I++++  ++t+ q+ s+ qky
  Sobic.009G039900.1.p  99 WTTYEHRNFLHGLEAFGSGEWNSISKYFVPTKTPVQISSHAQKY 142
                           *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.6391147IPR017930Myb domain
SMARTSM007171.3E-595145IPR001005SANT/Myb domain
SuperFamilySSF466893.9E-1397147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-899142IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-1299146IPR006447Myb domain, plants
PfamPF002499.1E-999142IPR001005SANT/Myb domain
CDDcd001671.28E-699143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDPNFNEGWS SSEIDMVKSL ITSHITNKTY TNDTNKKHNE FVDDLQAMFP WKEKHQVINL  60
YVELVVEMTM AQSSNQHVVG SSALVNVVPK KRRHAVKFWT TYEHRNFLHG LEAFGSGEWN  120
SISKYFVPTK TPVQISSHAQ KYFHRQECTT RRQCFNTNNV SLCDTQPSMP EDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G039900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303246.11e-104uncharacterized protein LOC110430251
TrEMBLA0A1B6P6R91e-128A0A1B6P6R9_SORBI; Uncharacterized protein
STRINGGRMZM2G030403_P016e-81(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-17MYB_related family protein