PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G040000.2.p
Common NameSb09g003390, SORBIDRAFT_09g003390
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 245aa    MW: 27998.4 Da    PI: 8.7472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G040000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.46e-1290133447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WTt E+  ++++ + +G g Wk I++++  +Rt+ q+ s+ qky
  Sobic.009G040000.2.p  90 WTTHEHRNFLHGLEVFGRGKWKNISKYFVPTRTPVQISSHAQKY 133
                           *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.75982138IPR017930Myb domain
SMARTSM007175.4E-886136IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-1586138IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-1389137IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.7E-1090133IPR009057Homeodomain-like
PfamPF002491.2E-890133IPR001005SANT/Myb domain
CDDcd001674.42E-990134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDPNFNSVWS TSEINMAKSL ITSHITNNTY TSSAHVNNNF GMPMEAPLVD NMGMLKCCLM  60
DETRAMRCRE GQQHMPNVVP KQRRHAVRFW TTHEHRNFLH GLEVFGRGKW KNISKYFVPT  120
RTPVQISSHA QKYFHRQECT TKKQHFSIND VSLYDTQPWV QNNSSRWETL TFTSGAFNTN  180
YNNFDGKHVA FNSLACASQT SFNQVATWIT DQQTTISSFV APVMEVDGSQ MTSNGHQLGH  240
FLHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G040000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440574.10.0myb-like protein J
TrEMBLA0A1Z5R0X70.0A0A1Z5R0X7_SORBI; Uncharacterized protein
STRINGSb09g003390.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.12e-18MYB family protein