PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G040100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 245aa    MW: 27501.7 Da    PI: 9.3516
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G040100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-1190133447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WT +E+  ++++ + +G g Wk I++++  +Rt+ q+ s+ qky
  Sobic.009G040100.1.p  90 WTRDEHRNFLRGLEVFGRGKWKNISKYFVPTRTPVQISSHAQKY 133
                           *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.25282138IPR017930Myb domain
SuperFamilySSF466896.28E-1686138IPR009057Homeodomain-like
SMARTSM007178.1E-986136IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.5E-1389137IPR006447Myb domain, plants
CDDcd001673.37E-1090134No hitNo description
Gene3DG3DSA:1.10.10.609.5E-1190135IPR009057Homeodomain-like
PfamPF002493.9E-990133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDPNFNSVWS TSEINMVKSV ITSHITNNTY TSSAHVNNNF GMSMEAPPMD NMGTLQGYLV  60
DEIGPMRHVE GQQHVPNVVP KQRRHAVRFW TRDEHRNFLR GLEVFGRGKW KNISKYFVPT  120
RTPVQISSHA QKYFRRQECT TKKQRFSIND VGLYDTQPLV QNNSSSWEAL TIPGGAYNTN  180
YNGFDGKHVA FKSLACASHT SVNQVATWTT DQQTTISSFV APAMEVDGSQ MTTNGHQLGG  240
FLHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G040100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3185181e-107AJ318518.1 Zea mays mRNA for one repeat myb transcriptional factor (gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303938.10.0transcription factor MYB1R1-like
TrEMBLA0A1B6P6M40.0A0A1B6P6M4_SORBI; Uncharacterized protein
STRINGSb09g003390.11e-152(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.17e-20MYB_related family protein