PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G050600.1.p
Common NameSb09g004315, SORBIDRAFT_09g004315
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 157aa    MW: 17377.7 Da    PI: 10.3527
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G050600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.4e-192862135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C+ C+tt Tp+WR gp g+++LCnaCG++yrkk++
  Sobic.009G050600.1.p 28 CVECRTTATPMWRGGPTGPRSLCNACGIRYRKKRR 62
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-142281IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-132563No hitNo description
Gene3DG3DSA:3.30.50.101.0E-142763IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402853IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.1762858IPR000679Zinc finger, GATA-type
PfamPF003206.1E-172862IPR000679Zinc finger, GATA-type
CDDcd002027.87E-122863No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MMMDSAAEHQ HHKVIGIAPV AEAGRPCCVE CRTTATPMWR GGPTGPRSLC NACGIRYRKK  60
RRQELGLDTT KKPQQNQAQP QTPQQQQQQQ QQQQQQQHQD QDQSHSQATS AVVKENNTKS  120
SNLQVVKKRR VLMGVEEAAI LLMALSSSSR STLLHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G050600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280124e-62KJ728012.1 Zea mays clone pUT6147 C2C2-GATA transcription factor (GATA12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440630.21e-111GATA transcription factor 23
TrEMBLA0A1B6P6L41e-110A0A1B6P6L4_SORBI; Uncharacterized protein
STRINGSb09g004315.11e-111(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-20GATA transcription factor 23