PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G050600.2.p
Common NameSb09g004315, SORBIDRAFT_09g004315
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 123aa    MW: 13884.5 Da    PI: 10.5452
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G050600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA27.25.3e-0911281835
                  GATA 18 gnktLCnaCGlyyrkkgl 35
                           +k+LCnaCG++yrkk++
  Sobic.009G050600.2.p 11 HHKSLCNACGIRYRKKRR 28
                          6899***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003201.8E-61128IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-51229IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MMMDSAAEHQ HHKSLCNACG IRYRKKRRQE LGLDTTKKPQ QNQAQPQTPQ QQQQQQQQQQ  60
QQQHQDQDQS HSQATSAVVK ENNTKSSNLQ VVKKRRVLMG VEEAAILLMA LSSSSRSTLL  120
HG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G050600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280125e-52KJ728012.1 Zea mays clone pUT6147 C2C2-GATA transcription factor (GATA12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440630.25e-75GATA transcription factor 23
TrEMBLA0A1Z5R2142e-81A0A1Z5R214_SORBI; Uncharacterized protein
STRINGSb09g004315.12e-74(Sorghum bicolor)