PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G052800.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 129aa MW: 13711.7 Da PI: 10.6772

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G052800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.00072	62	110	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH..HHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKae..iLekAveYIksLq 55 rrR ++++++e Lr+l+P++s+++++ + ++ L +A YI +Lq Sobic.009G052800.1.p 62 SRRRDMEVRKKMEVLRRLVPSSSGGGDGDGDEVDelLLLRAAGYIAQLQ 110 5899999**************9855555444444224455666776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-6	59	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-4	61	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MGAHTGSRGC SPSTSTARRR TRPPVASSAA MAAARRPSPT TKPTMSKDVD AAEGKARVKA 60 CSRRRDMEVR KKMEVLRRLV PSSSGGGDGD GDEVDELLLL RAAGYIAQLQ AQVTVMQFMV 120 DVLEDAKH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G052800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683641.1	9e-33	transcription factor bHLH83-like
TrEMBL	A0A1B6P6N4	3e-86	A0A1B6P6N4_SORBI; Uncharacterized protein
STRING	Sb09g004490.1	3e-64	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26
Representative plant	OGRP14305	2	2

Link Out ? help Back to Top
Phytozome	Sobic.009G052800.1.p