PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G057000.2.p
Common NameSb09g004820, SORBIDRAFT_09g004820
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 231aa    MW: 24727.2 Da    PI: 10.5941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G057000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-112165554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          h+e+ErrRR+riN  +++Lr+++P a     + ++Ka+ L ++v  +k+L
  Sobic.009G057000.2.p 21 HSEAERRRRERINAHLATLRRMIPDA-----RQMDKATLLAQVVSQLKEL 65
                          9************************9.....78**********9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6721665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-122076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-82165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-102271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.4E-4113162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSSSTPRKIS TAEAQEALKI HSEAERRRRE RINAHLATLR RMIPDARQMD KATLLAQVVS  60
QLKELKKKTA ETTTQTPPAT TIPAEANGIA VHCYTGAAAV TGYGRPPPAA TYVRASVSCD  120
DRPGLHADLA AAFRTMRLRP VRADVAALGG RAQCDFLLCR EEGGGVMTSA AAGGRDLRAL  180
EEGVRRELAR AAFPETTTTT TYGCNGTRSR RQRLVGSSHC VLLGHGHGLR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G057000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440667.11e-166transcription factor AIG1
TrEMBLC5Z0Z91e-164C5Z0Z9_SORBI; Uncharacterized protein
STRINGSb09g004820.11e-165(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-16bHLH family protein