PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G071600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 392aa    MW: 43966.4 Da    PI: 7.2352
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G071600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1064.6e-33451912128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd.....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 
                           p+G++F+P+d+el+ e+L+  v++     +        +i+++d     i++++P++Lp  v+ +  + +fF++ +k+y++g+rk+r+ 
  Sobic.009G071600.1.p  45 PAGVKFDPSDQELI-EHLESMVKEGGsraH---PligdFIHTIDqgndgICYTHPENLP-GVTRNGVSKHFFHRPSKAYTSGTRKRRKi 128
                           89************.99*****99995552...2333345555445566**********.444556688******************87 PP

                   NAM  78 ...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                      + ++ W++tgk+++vl+ +g+++g kktLv+y   g+++k+ekt+Wvmh+y+l
  Sobic.009G071600.1.p 129 kserglrscddVGEACWHKTGKTRPVLV-GGQQKGWKKTLVLYnsYGKQRKPEKTNWVMHQYHL 191
                           899999988888899*************.9*************6658999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3638208IPR003441NAC domain
PROSITE profilePS5100531.11944208IPR003441NAC domain
PfamPF023651.5E-1545191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MCSSNSTSDL TDEKLKDQQR STPASRRCPS CDHELDCNPD MVGFPAGVKF DPSDQELIEH  60
LESMVKEGGS RAHPLIGDFI HTIDQGNDGI CYTHPENLPG VTRNGVSKHF FHRPSKAYTS  120
GTRKRRKIKS ERGLRSCDDV GEACWHKTGK TRPVLVGGQQ KGWKKTLVLY NSYGKQRKPE  180
KTNWVMHQYH LGREEKDGEL VVSKVFYQQK QLRPTATMMG QNDERVEVTS EAMKDMLPGC  240
GAAAAEAGDA MIQLQQHLQQ RQADGQSRFT SARMSREVGV GNPLVGDQGL LHETHHIPSQ  300
HNEVRSMLVK PVHTMPSVES TPLEHRIDQI IACSAISLSP PEQRSENQED RQQQKKVDCR  360
RPCSSEEAMI ACQTSSTEED VQEELQLFPR R*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G071600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303920.10.0NAC domain-containing protein 10
SwissprotQ9M0F87e-87NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1B6P7060.0A0A1B6P706_SORBI; Uncharacterized protein
STRINGSb09g006018.11e-167(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.16e-89NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]