PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G071600.6.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 280aa MW: 31621.7 Da PI: 8.8517

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G071600.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.2	2e-33	5	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd.....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 p+G++F+P+d+el+ e+L+ v++ + +i+++d i++++P++Lp v+ + + +fF++ +k+y++g+rk+r+ Sobic.009G071600.6.p 5 PAGVKFDPSDQELI-EHLESMVKEGGsraH---PligdFIHTIDqgndgICYTHPENLP-GVTRNGVSKHFFHRPSKAYTSGTRKRRKi 88 89**********.99*99995552...2333345555445566******.444556688**************87 PP NAM 78 ...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + ++ W++tgk+++vl+ +g+++g kktLv+y g+++k+ekt+Wvmh+y+l Sobic.009G071600.6.p 89 kserglrscddVGEACWHKTGKTRPVLV-GGQQKGWKKTLVLYnsYGKQRKPEKTNWVMHQYHL 151 899999988888899*********.9*********6658999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-36	2	168	IPR003441	NAC domain
PROSITE profile	PS51005	31.119	4	168	IPR003441	NAC domain
Pfam	PF02365	6.8E-16	5	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MVGFPAGVKF DPSDQELIEH LESMVKEGGS RAHPLIGDFI HTIDQGNDGI CYTHPENLPG 60 VTRNGVSKHF FHRPSKAYTS GTRKRRKIKS ERGLRSCDDV GEACWHKTGK TRPVLVGGQQ 120 KGWKKTLVLY NSYGKQRKPE KTNWVMHQYH LGREEKDGEL VVSKVFYQQK QLRPTATMMG 180 QNDERVEVTS EAMKDMLPGC GAAAAEAGDA MIQLQQHLQQ RQADGQSRFT SARMSREDRQ 240 QQKKVDCRRP CSSEEAMIAC QTSSTEEDVQ EELQLFPRR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G071600.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303920.1	1e-158	NAC domain-containing protein 10
Swissprot	Q9M0F8	2e-79	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1Z5R1C4	0.0	A0A1Z5R1C4_SORBI; Uncharacterized protein
TrEMBL	A0A1Z5R2C7	0.0	A0A1Z5R2C7_SORBI; Uncharacterized protein
STRING	Sb09g006018.1	1e-139	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	3e-81	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Sobic.009G071600.6.p

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]