PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G073500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 396aa    MW: 43892.6 Da    PI: 7.3006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G073500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14220268355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + h   Er+RR+++N++f  Lr++lP+a    s K +Ka+iL +A +Y++ L+
  Sobic.009G073500.1.p 220 QQHVLSERKRRQKLNDSFKALRTVLPPA----SSKKDKASILIRARDYVSTLE 268
                           568999*********************9....8999*************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14219266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.90E-14219272No hitNo description
SuperFamilySSF474595.76E-16220283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-12220268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1701.5E-4267289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDGCSSWLPL FQGSGIGDAV SSRSGSEVQQ KQDLPISSQV EEQLQQFYLL MDMEKNGHPE  60
PEVVVPSSES SIFPSFSGSP DETSSLMPWS GNDTTASNYC HHPAEVSPAT YGGDRRDDHQ  120
CYGNLDTILN LDEFKCQDAH NGRAQHNNGH GGAFMPYVRH LSPKKQPNKP GSGGQRAIKA  180
AISAVARMHM VRLAQWRQCG YQMEMAVALP TGWSNNCNQQ QHVLSERKRR QKLNDSFKAL  240
RTVLPPASSK KDKASILIRA RDYVSTLESR VSELEKKNRM LVELQHLRNN GGDVYDKKIE  300
LDIDIDREAC AVKETSQEFH LKIMVGSECN AMDAVVSILE CLKEIGDVRL VAMDAVSRAT  360
TLTLQMKSSR CNDNILKEYV IKSVKGAMKS KTETS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G073500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303910.10.0uncharacterized protein LOC8065916 isoform X1
TrEMBLA0A1B6P7160.0A0A1B6P716_SORBI; Uncharacterized protein
STRINGSb09g006196.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP1996222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-18bHLH family protein