PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G092100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 379aa    MW: 40832.5 Da    PI: 6.8836
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G092100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.83.9e-27191250258
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                           dDgy+WrKYGqK++ gs+fprsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  Sobic.009G092100.1.p 191 DDGYTWRKYGQKDILGSRFPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 250
                           8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-27183250IPR003657WRKY domain
SuperFamilySSF1182901.7E-24188250IPR003657WRKY domain
SMARTSM007741.8E-37190252IPR003657WRKY domain
PfamPF031062.8E-25191250IPR003657WRKY domain
PROSITE profilePS5081121.264191248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDDVLRQIDE GFRLARDLME ELPAAQNERT YLADRCHGIV QAYVAAIRML HPHGGTEDTA  60
SSPPPLRPPH PPSPHFGGDG SGSGQHDHEI PQLDLLRPFL GGAPSPSAPS SFPHNLGRLL  120
AESSFINTTP VVDAFGAGTS SGGPVRRQAS SSRSSPPVQL RQQHRRRREN GERMTIMVPV  180
QRTGNTDLPP DDGYTWRKYG QKDILGSRFP RSYYRCTHKN YYGCEAKKKV QRLDDDPFTY  240
EVTYCGNHTC LTSTTPLLTI PAGPATVAST AANMLNNSPT DSATALAAGH QDLFMPAAEH  300
PAQALSTAIQ LGISWMPSTL VGSSAPEGSS SQVNVPASGR DTAEYPVMDL ADAMFNSGSR  360
GGSSMDAIFL ARHDRRDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21191250968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G092100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439531.20.0probable WRKY transcription factor 17
TrEMBLA0A1Z5R1R10.0A0A1Z5R1R1_SORBI; Uncharacterized protein
STRINGGRMZM2G127064_P011e-156(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-45WRKY DNA-binding protein 55