PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G093000.1.p
Common NameSb09g011040, SORBIDRAFT_09g011040
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 246aa    MW: 27158.1 Da    PI: 9.0033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G093000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-11599299
                          EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3  2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                          fkvl   ++++s+ l+++++ a  +      +   +e+ t ++ ++ g +W vk+   + +++ +l++GW eF   +g+  g fvv+ ++ 
  Sobic.009G093000.1.p  5 FKVL--LHTSSSHKLRISNELA-GCfdtgegE-GAPEP-TAIVVSPFGTVWPVKV--GQDGDGAFLGRGWAEFLPVHGVGLGWFVVLWHE- 87
                          4666..7888899999999999.555999842.34455.8999************..999999*************************65. PP

                          SSEE..EEEEE-S CS
                    B3 87 rsefelvvkvfrk 99
                            +++l+vk+f++
  Sobic.009G093000.1.p 88 -GGGTLTVKMFDT 99
                          .58999****997 PP
2B334.24.4e-111151881690
                           EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                            +lp +f++ +  ++ ++s+t ++ ++ g+ W++++  ++ ++++++t+ W++F + +g+  g++++++++g++  
  Sobic.009G093000.1.p 115 KRLPARFVKGYiTKEWQNSQTAIIVSPLGKCWQFEF--KNDQSGIFFTGRWSQFLDFHGISKGEVLLLRYEGNMVS 188
                           589*****9998445557889***************..999999**************************998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.9382100IPR003340B3 DNA binding domain
PfamPF023625.8E-9599IPR003340B3 DNA binding domain
SMARTSM010190.00415100IPR003340B3 DNA binding domain
CDDcd100178.09E-9598No hitNo description
SuperFamilySSF1019363.53E-135102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-115101IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0011102196IPR003340B3 DNA binding domain
PfamPF023624.6E-9115187IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-14116200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-13116198IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-9116193No hitNo description
PROSITE profilePS508639.291117196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVKQFKVLLH TSSSHKLRIS NELAGCFDTG EGEGAPEPTA IVVSPFGTVW PVKVGQDGDG  60
AFLGRGWAEF LPVHGVGLGW FVVLWHEGGG TLTVKMFDTS LCIKEFIAPA AEAAKRLPAR  120
FVKGYITKEW QNSQTAIIVS PLGKCWQFEF KNDQSGIFFT GRWSQFLDFH GISKGEVLLL  180
RYEGNMVSKF KAFGLNGCQK VFKNQNAEIK QNTEKQQETP SPIRKCNSSD EKSKNQNAGI  240
HLSEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G093000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.21e-111putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS752e-67Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLC5YVQ70.0C5YVQ7_SORBI; Uncharacterized protein
STRINGSb09g011040.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Representative plantOGRP10106410