PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G102200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 200aa    MW: 21932.3 Da    PI: 11.4964
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G102200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.93.1e-192264345
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          ie+   r vtfskR+ g+lKKA+ELS LC+a+va ++fs tgk
  Sobic.009G102200.2.p 22 IEDPKSRLVTFSKRKSGLLKKASELSLLCGARVAAVVFSATGK 64
                          899999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-251271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.1471272IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-231384IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-151434IPR002100Transcription factor, MADS-box
PfamPF003191.5E-212265IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-153449IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-154970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVSPRGAGKA SQGRRRRELV LIEDPKSRLV TFSKRKSGLL KKASELSLLC GARVAAVVFS  60
ATGKPSAVGA PSVERVISRF TPLPSGEGDD DREREVMEVT ARRAKETGAR VAEEKTRMHA  120
VGEKVLRAAA AGGVRFWWQA DAEALGEEEL REFARKLRRL RDNVRRRADK LQLAPAASQP  180
TTAPNILQFG FFLKKNLLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G102200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302940.11e-138agamous-like MADS-box protein AGL29 isoform X1
RefseqXP_021302941.11e-138agamous-like MADS-box protein AGL29 isoform X1
TrEMBLA0A1B6P7U61e-137A0A1B6P7U6_SORBI; Uncharacterized protein
STRINGSb09g016220.12e-95(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-22AGAMOUS-like 62