PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G103800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 258aa    MW: 27799.9 Da    PI: 7.8285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G103800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-194291255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr+++ +g+WvAeIr+p++   r r +lg+f tae+Aa+a+++a++ l+g
  Sobic.009G103800.1.p 42 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATAEDAARAYDRAALLLYG 91
                          59****999.**********954...5**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-304298IPR001471AP2/ERF domain
SMARTSM003809.0E-3842105IPR001471AP2/ERF domain
PfamPF008471.1E-124290IPR001471AP2/ERF domain
CDDcd000181.19E-184297No hitNo description
PROSITE profilePS5103222.3794299IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-214298IPR016177DNA-binding domain
PRINTSPR003672.2E-104354IPR001471AP2/ERF domain
PRINTSPR003672.2E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEPNNNQPAA TAEEAAAGSG PGGEGGRKGK APKGGPENGK FRYRGVRQRS WGKWVAEIRE  60
PRKRSRKWLG TFATAEDAAR AYDRAALLLY GPRAHLNLTS PPPPTLAAPR SHPHSSATSS  120
SSAPPALRPL LPRPPLHHQL SSGACAPAPD FHHHHQQFQC HHLLPQAQPT PPLYYANTAT  180
ASTVTTTVPT RVAVPQEPAV APAVGSSTSL QEPQASTPEE APRETGWDYH GGEEEDYAAA  240
LLWDEPEPFF WFDVFLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-164398662ATERF1
3gcc_A1e-164398662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G103800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1254900.0AY125490.1 Zea mays AP2 domain transcription factor (abi4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302559.10.0ethylene-responsive transcription factor ABI4
TrEMBLA0A1B6P7N10.0A0A1B6P7N1_SORBI; Uncharacterized protein
STRINGGRMZM2G093595_P011e-109(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-20ERF family protein