PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G111200.1.p
Common NameSb09g017950, SORBIDRAFT_09g017950
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 200aa    MW: 20488.7 Da    PI: 5.1343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G111200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-2053102356
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+G+r+++ +grW+AeIrdp++    +r++lg++ t+e+Aa+a++aa+++++g+
  Sobic.009G111200.1.p  53 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDAAAREIRGA 102
                           9*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3152109IPR001471AP2/ERF domain
SMARTSM003804.2E-3452115IPR001471AP2/ERF domain
PROSITE profilePS5103224.64552109IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2252110IPR016177DNA-binding domain
PfamPF008473.1E-1452101IPR001471AP2/ERF domain
PRINTSPR003671.6E-105364IPR001471AP2/ERF domain
CDDcd000181.12E-1753108No hitNo description
PRINTSPR003671.6E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MCGGAIIADF VPAGGRRQAT DDTISASSLL SGEDQHLEEL GSRVPAPGRK TAYRGIRRRP  60
WGRWAAEIRD PRKGARVWLG TYATPEDAAR AYDAAAREIR GAKAKLNFPP AVGAGAGAGA  120
REPAAKRRRT SSSAAAEESS GSSPAATTTV VAGVGGGGGG EETLRDCMSG LEAFLGLQEE  180
AADEGGDAEA WDAVDLMFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2153115669ATERF1
3gcc_A2e-2153115669ATERF1
5wx9_A2e-21531181581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G111200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439648.11e-137ethylene-responsive transcription factor ERF071
TrEMBLC5YWT91e-136C5YWT9_SORBI; Uncharacterized protein
STRINGSb09g017950.11e-137(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-26ethylene-responsive element binding protein