PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G120600.3.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 448aa MW: 47741.7 Da PI: 6.7165

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G120600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	53.1	1.1e-16	10	140	7	127
NAM 7 FhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratk..sgyW 83 F P +el+ +L+ k++g++l+++ + ++++diy++eP +L + k k+++++w+fF++ + k+++++rk+r ++ g+W Sobic.009G120600.3.p 10 FTP--SELL-SFLRLKIAGEPLPATAAahFHDADIYTAEPAQLTTlfdpapakKGKGSSSSWFFFTHVRPKSSSDSRKSRLVAggVGTW 95 555..4788.99*******665442249*********85578888755555667*****************55423788 PP NAM 84 katgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyr 127 ++ ++vl+ +g g + + + k ++ +e+t+W m e++ Sobic.009G120600.3.p 96 HSERAPRRVLDDEGDCAGHSQYFSYKlKIGKNCSERTEWYMLEFS 140 *********999*******9555778889******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.497	1	165	IPR003441	NAC domain
SuperFamily	SSF101941	3.27E-18	10	164	IPR003441	NAC domain
Pfam	PF02365	6.4E-7	11	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MPPPPGDCSF TPSELLSFLR LKIAGEPLPA TAAAHFHDAD IYTAEPAQLT TLFDPAPAKK 60 GKGSSSSWFF FTHVRPKSSS DSRKSRLVAG GVGTWHSERA PRRVLDDEGD CAGHSQYFSY 120 KLKIGKNCSE RTEWYMLEFS DGQEADHERV HGGEPQLVLC NVYKAHTHSR SSNGSTSTPS 180 SSASARKRKA VGEASAPPVK ARRQLFYSSA PASAAKSQEQ VRPLLPPSGQ SDTLDCIALM 240 TKADGKATTS QLKIGDISVF SRFWPEPEKS TSDCIALMSK AEGEGEATTS QLKIGDTPDF 300 SRFWPEPEKS FDGGYTTAGG ALPTLENCSR TNVRDVADVF CGQDAWPSAF HSNNDTTTFV 360 CGMPSAPVLQ PPAFVCGMPS APVLPPPAFV CGIPSAPVLQ PPAFVCGMPS APVLLPPAFV 420 CSMPSAPALP PPGDASWWCG SHDVRSY*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MPPPPGDCSF TPSELLSFLR LKIAGEPLPA TAAAHFHDAD IYTAEPAQLT TLFDPAPAKK  60
GKGSSSSWFF FTHVRPKSSS DSRKSRLVAG GVGTWHSERA PRRVLDDEGD CAGHSQYFSY  120
KLKIGKNCSE RTEWYMLEFS DGQEADHERV HGGEPQLVLC NVYKAHTHSR SSNGSTSTPS  180
SSASARKRKA VGEASAPPVK ARRQLFYSSA PASAAKSQEQ VRPLLPPSGQ SDTLDCIALM  240
TKADGKATTS QLKIGDISVF SRFWPEPEKS TSDCIALMSK AEGEGEATTS QLKIGDTPDF  300
SRFWPEPEKS FDGGYTTAGG ALPTLENCSR TNVRDVADVF CGQDAWPSAF HSNNDTTTFV  360
CGMPSAPVLQ PPAFVCGMPS APVLPPPAFV CGIPSAPVLQ PPAFVCGMPS APVLLPPAFV  420
CSMPSAPALP PPGDASWWCG SHDVRSY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G120600.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303467.1	0.0	uncharacterized protein LOC8077939
TrEMBL	A0A1Z5R2B4	0.0	A0A1Z5R2B4_SORBI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16781	6	12

Link Out ? help Back to Top
Phytozome	Sobic.009G120600.3.p