PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G135000.1.p
Common NameSb09g020110, SORBIDRAFT_09g020110
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 865aa    MW: 94968.8 Da    PI: 5.6897
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G135000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.35.9e-35186260276
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                           Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  Sobic.009G135000.1.p 186 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 260
                           ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-26181247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.487183260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-33184263IPR004333Transcription factor, SBP-box
PfamPF031107.1E-27186260IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MDVPDSGGGA PDAGEPIWDW GNLLDFVVQD DDSLVLPWDD AAAGIAAAAD PTEAATAPLL  60
PASPPLPQPV EVEPEPEPEP EPEPGPVLPP PPLRVQGIGR RVRKRDPRLV CPNYLAGRVP  120
CACPEVDEMV AAAEVEDVAT EFLAGARKKT KTAAAAARRS KAAAAGAAPG AAGGGAARAA  180
AAEMKCQVPG CEADIRELKG YHRRHRVCLR CAHAAAVMLD GVQKRYCQQC GKFHILLDFD  240
EDKRSCRRKL ERHNKRRRRK PDSKGTLDKE IDEQLDLSAD VSGDGELREE NMEGTTSEML  300
ETVLSNKVLD RETPVGSEDV LSSPTCTQPS LQNDQSKSVV TFAASVEACI GAKQESVKLV  360
NSPMHDTKSA YSSSCPTGRI SFKLYDWNPA EFPRRLRHQI FEWLASMPVE LEGYIRPGCT  420
ILTVFIAMPQ HMWDKLSDDA ADLLRNLVNS PNSLLLGKGA FFIHVNNMLF QVLKDGATLM  480
STRLDVQAPR IDYVHPTWFE AGKPGDLILY GSSLDQPNFR SLLSFDGDYL KHDCYRLTSH  540
DTFDRVENGD LIPDSQHEIF RINITQSRPD IHGPAFVEVE NIFGLSNFVP ILFGSKQLCS  600
ELERIQDALC GSYSKNNVLG ELLSASSDPH ERRKLHSSVM SGFLIDIGWL IRKTTPDEFK  660
NVLSSTNIQR WIHILKFLIQ NDFINVLEII VKSMDTIIGS EILSNLERGR LEDHVTTFLG  720
YVSHARNIVE RRANHDEKTQ IETGGIIVNS PNQPSLGASL PHASENTDIG GDNKLNSADE  780
EETMPLVTRD VSHRHCCQPD MTARWLKPSL IVTYPGGATR MRLVTTVVVA AVLCFTACLV  840
LFHPHGVGVL AAPVKRYLSS DSAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A6e-41185265585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242260KRSCRRKLERHNKRRRRKP
2246258RRKLERHNKRRRR
3253260NKRRRRKP
4254259KRRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.124070.0ovary
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G135000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439790.10.0squamosa promoter-binding-like protein 9 isoform X1
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLC5YXS30.0C5YXS3_SORBI; Uncharacterized protein
STRINGSb09g020110.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Representative plantOGRP48281320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-130squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]