PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G135300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 825aa    MW: 92139.1 Da    PI: 7.1286
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G135300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.25.5e-13731817290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek......dgkwevtklele 84 
                           ++++YA  +GF ++ +++k++        r+  Cs++g+ +  k + +++ r++ +++tgCk  +k+k  +      +gk  ++k++l+
  Sobic.009G135300.2.p 731 MFRRYAVATGFPIKWARKKRT-------VRDISCSMSGTWKYYKPE-QQRTRNKFTKKTGCKVYMKLKHVSdmegnyNGKVIIDKIQLD 811
                           89************9987776.......6889**********9988.99999**************9986555455678889******* PP

                  FAR1  85 HnHela 90 
                           HnH+l+
  Sobic.009G135300.2.p 812 HNHPLS 817
                           ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-7731817IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MKQKLDHVPE RVTTITISNS QQFYEIQIPL STGDNGGMAS SANTNADGTH DASGSIHERV  60
VPRHHQKKTI PNKFQQKGAQ CSSAATPKRR TPDTSQHEDL LSGPTRRSPR LAASQDNDDD  120
DFEPAIKRLR LKVPAHKDPK SKKSSLPSIQ EEDDDGILGK INSCCTPNHV LDAINKLSEP  180
QKNRVHELGW GKFLEIAIDC VESRNLFLYL LDRVDIDSMF LRVPPNIELP INKAAVHAVL  240
GVPAGTEVIS KKSSKELSNA KRELMAQLGI ATNKITVPRL LEEVAKGNAD DLSMKCFFLV  300
IFNRFLFPGS AFDIANTDLQ FIMDFQNFGK VDWQQAVIDH IRTSAKEWQS PGAKNTANPT  360
IRSCAPFLLI YYLENLDHPL NDNNHRMVVP RAAVFSKQYI STLTNADRWA DKYDRICYGK  420
LRQKNPVGSA YQKVYTMQHT AVPASFQLPQ LSDLLKGVLD NVAASTNPHF LQLITTVDRD  480
IRANQKVIHE LHHTNECLLI KFSEDVKELL ANASIPTVTE VQHQTGQQTR PESSTRNLQE  540
PTLQRNDSNL AGPSHTETAT VQVEQPADAT QPLAGHVSSC SAGARQEEIV AFRDEQVAEQ  600
EQPLTDLVDD HSVSNQRATA NGLNILTMVC EQLGKQPHGS AHLDMGGHHE DSLIRKEHRW  660
AAAMASHSVT PEDLDHKDAI DTPATPPATL SAAEIVTPEV GKTYTHPPAL PEDMIPKVGL  720
LFDTEEHAYE MFRRYAVATG FPIKWARKKR TVRDISCSMS GTWKYYKPEQ QRTRNKFTKK  780
TGCKVYMKLK HVSDMEGNYN GKVIIDKIQL DHNHPLSDEL IRFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G135300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848760.0KF184876.1 Saccharum hybrid cultivar R570 clone BAC 027M20 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304152.10.0uncharacterized protein LOC8085124 isoform X4
TrEMBLA0A1B6P8C90.0A0A1B6P8C9_SORBI; Uncharacterized protein
STRINGSb09g020125.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.14e-08FAR1-related sequence 12