PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G135300.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 864aa    MW: 96075.7 Da    PI: 7.2192
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G135300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.15.9e-13770856290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek......dgkwevtklele 84 
                           ++++YA  +GF ++ +++k++        r+  Cs++g+ +  k + +++ r++ +++tgCk  +k+k  +      +gk  ++k++l+
  Sobic.009G135300.5.p 770 MFRRYAVATGFPIKWARKKRT-------VRDISCSMSGTWKYYKPE-QQRTRNKFTKKTGCKVYMKLKHVSdmegnyNGKVIIDKIQLD 850
                           89************9987776.......6889**********9988.99999**************9986555455678889******* PP

                  FAR1  85 HnHela 90 
                           HnH+l+
  Sobic.009G135300.5.p 851 HNHPLS 856
                           ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-7770856IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MKQKLDHVPE RVTTITISNS QQFYEIQIPL STGDNGGMAS SANTNADGTH DASGSIHERV  60
VPRHHQKKTI PNKFQQKGAQ CSSAATPKRR TPDTSQHEDL LSGPTRRSPR LAASQDNDDD  120
DFEPAIKRLR LKVPAHKDPK SKKSSLPSIQ EEDDDGILGK INSCCTPNHV LDAINKLSEP  180
QKNRVHELGW GKFLEIAIDC VESRNLFLYL LDRVDIDSMF LRVPPNIELP INKAAVHAVL  240
GVPAGTEVIS KKSSKELSNA KRELMAQLGI ATNKITVPRL LEEVAKGNAD DLSMKCFFLV  300
IFNRFLFPGS AFDIANTDLQ FIMDFQNFGK VDWQQAVIDH IRTSAKEWQS PGAKNTANPT  360
IRSCAPFLLI YYLENLDHPL NDNNHRMVVP RAAVFSKQYI STLTNADRWA DKYDRICYGK  420
LRQKNPVGSA YQKVYTMQHT AVPASFQLPQ LSDLLKGVLD NVAASTNPHF LQLITTVDRD  480
IRANQKVIHE LHHTNECLLI KFSEDVKELL ANASIPTVTE VQHQTGQQTR PESSTRNLQE  540
PTLQRNDSNL AGPSHTETAT VQVEQPADAT QPLAGLGHVS SCSAGARQEE IVAFRDEQVA  600
EQEQPLTDLV DDHSVSNQRA TANGVHVVTT GLNILTMVCE QLGKQPHGSA HLDMGGHHED  660
SLIRKEHRWA AAMASHSVRG PSSSMQLPVT GSQTGVSQPL PMPIPIQVTP EDLDHKDAID  720
TPATPPATLS AAEIVTPEVG KTYTHPPALP EDMIPKVGLL FDTEEHAYEM FRRYAVATGF  780
PIKWARKKRT VRDISCSMSG TWKYYKPEQQ RTRNKFTKKT GCKVYMKLKH VSDMEGNYNG  840
KVIIDKIQLD HNHPLSDELI RFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G135300.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848760.0KF184876.1 Saccharum hybrid cultivar R570 clone BAC 027M20 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304148.10.0uncharacterized protein LOC8085124 isoform X1
RefseqXP_021304149.10.0uncharacterized protein LOC8085124 isoform X1
TrEMBLA0A1Z5R3I00.0A0A1Z5R3I0_SORBI; Uncharacterized protein
STRINGSb09g020125.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP929122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.14e-08FAR1-related sequence 12