PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G135300.6.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 862aa    MW: 95905.5 Da    PI: 7.2192
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G135300.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.15.8e-13768854290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek......dgkwevtklele 84 
                           ++++YA  +GF ++ +++k++        r+  Cs++g+ +  k + +++ r++ +++tgCk  +k+k  +      +gk  ++k++l+
  Sobic.009G135300.6.p 768 MFRRYAVATGFPIKWARKKRT-------VRDISCSMSGTWKYYKPE-QQRTRNKFTKKTGCKVYMKLKHVSdmegnyNGKVIIDKIQLD 848
                           89************9987776.......6889**********9988.99999**************9986555455678889******* PP

                  FAR1  85 HnHela 90 
                           HnH+l+
  Sobic.009G135300.6.p 849 HNHPLS 854
                           ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-7768854IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MKQKLDHVPE RVTTITISNS QQFYEIQIPL STGDNGGMAS SANTNADGTH DASGSIHERV  60
VPRHHQKKTI PNKFQQKGAQ CSSAATPKRR TPDTSQHEDL LSGPTRRSPR LAASQDNDDD  120
DFEPAIKRLR LKVPAHKDPK SKKSSLPSIQ EEDDDGILGK INSCCTPNHV LDAINKLSEP  180
QKNRVHELGW GKFLEIAIDC VESRNLFLYL LDRVDIDSMF LRVPPNIELP INKAAVHAVL  240
GVPAGTEVIS KKSSKELSNA KRELMAQLGI ATNKITVPRL LEEVAKGNAD DLSMKCFFLV  300
IFNRFLFPGS AFDIANTDLQ FIMDFQNFGK VDWQQAVIDH IRTSAKEWQS PGAKNTANPT  360
IRSCAPFLLI YYLENLDHPL NDNNHRMVVP RAAVFSKQYI STLTNADRWA DKYDRICYGK  420
LRQKNPVGSA YQKVYTMQHT AVPASFQLPQ LSDLLKGVLD NVAASTNPHF LQLITTVDRD  480
IRANQKVIHE LHHTNECLLI KFSEDVKELL ANASIPTVTE VQHQTGQQTR PESSTRNLQE  540
PTLQRNDSNL AGPSHTETAT VQVEQPADAT QPLAGHVSSC SAGARQEEIV AFRDEQVAEQ  600
EQPLTDLVDD HSVSNQRATA NGVHVVTTGL NILTMVCEQL GKQPHGSAHL DMGGHHEDSL  660
IRKEHRWAAA MASHSVRGPS SSMQLPVTGS QTGVSQPLPM PIPIQVTPED LDHKDAIDTP  720
ATPPATLSAA EIVTPEVGKT YTHPPALPED MIPKVGLLFD TEEHAYEMFR RYAVATGFPI  780
KWARKKRTVR DISCSMSGTW KYYKPEQQRT RNKFTKKTGC KVYMKLKHVS DMEGNYNGKV  840
IIDKIQLDHN HPLSDELIRF E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G135300.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848760.0KF184876.1 Saccharum hybrid cultivar R570 clone BAC 027M20 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304150.10.0uncharacterized protein LOC8085124 isoform X2
TrEMBLA0A1Z5R3Q00.0A0A1Z5R3Q0_SORBI; Uncharacterized protein
STRINGSb09g020125.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.14e-08FAR1-related sequence 12